Package: exactLTRE 0.1.2.9000

exactLTRE: An Exact Method for Life Table Response Experiment (LTRE) Analysis

Life Table Response Experiments (LTREs) are a method of comparative demographic analysis. The purpose is to quantify how the difference or variance in vital rates (stage-specific survival, growth, and fertility) among populations contributes to difference or variance in the population growth rate, "lambda." We provide functions for one-way fixed design and random design LTRE, using either the classical methods that have been in use for several decades, or an fANOVA-based exact method that directly calculates the impact on lambda of changes in matrix elements, for matrix elements and their interactions. The equations and descriptions for the classical methods of LTRE analysis can be found in Caswell (2001, ISBN: 0878930965), and the fANOVA-based exact methods are described in Hernandez et al. (2023) <doi:10.1111/2041-210X.14065>. We also provide some demographic functions, including generation time from Bienvenu and Legendre (2015) <doi:10.1086/681104>. For implementation of exactLTRE where all possible interactions are calculated, we use an operator matrix presented in Poelwijk, Krishna, and Ranganathan (2016) <doi:10.1371/journal.pcbi.1004771>.

Authors:Christina Hernandez [aut, cre, cph]

exactLTRE_0.1.2.9000.tar.gz
exactLTRE_0.1.2.9000.zip(r-4.7)exactLTRE_0.1.2.9000.zip(r-4.6)exactLTRE_0.1.2.9000.zip(r-4.5)
exactLTRE_0.1.2.9000.tgz(r-4.6-any)exactLTRE_0.1.2.9000.tgz(r-4.5-any)
exactLTRE_0.1.2.9000.tar.gz(r-4.7-any)exactLTRE_0.1.2.9000.tar.gz(r-4.6-any)
exactLTRE_0.1.2.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
exactLTRE/json (API)
NEWS

# Install 'exactLTRE' in R:
install.packages('exactLTRE', repos = c('https://chrissy3815.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/chrissy3815/exactltre/issues

On CRAN:

Conda:

2.74 score 1 stars 11 scripts 214 downloads 22 exports 13 dependencies

Last updated from:51490816f2. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK108
source / vignettesOK138
linux-release-x86_64OK112
macos-release-arm64OK131
macos-oldrel-arm64OK127
windows-develOK71
windows-releaseOK59
windows-oldrelOK75
wasm-releaseOK90

Exports:calc_matrix_effectscalc_matrix_responsesclassicalLTREclassicalLTRE_fixedclassicalLTRE_randomcollapse_mat_listcov_matrixexactLTREexactLTRE_fixedexactLTRE_randomfundamental_matrixgeneration_timelamDifflamDiff_symmetriclamVarlifespanmake.Gmatrixmean_matrixr_noughtreMatrun_matrix_checksvariance_complete

Dependencies:codaexpmlatticeMASSMatrixmatrixcalcMatrixModelsmcmcMCMCpackpopdemoquantregSparseMsurvival