Package: exactLTRE 0.1.2.9000

exactLTRE: An Exact Method for Life Table Response Experiment (LTRE) Analysis

Life Table Response Experiments (LTREs) are a method of comparative demographic analysis. The purpose is to quantify how the difference or variance in vital rates (stage-specific survival, growth, and fertility) among populations contributes to difference or variance in the population growth rate, "lambda." We provide functions for one-way fixed design and random design LTRE, using either the classical methods that have been in use for several decades, or an fANOVA-based exact method that directly calculates the impact on lambda of changes in matrix elements, for matrix elements and their interactions. The equations and descriptions for the classical methods of LTRE analysis can be found in Caswell (2001, ISBN: 0878930965), and the fANOVA-based exact methods are described in Hernandez et al. (2023) <doi:10.1111/2041-210X.14065>. We also provide some demographic functions, including generation time from Bienvenu and Legendre (2015) <doi:10.1086/681104>. For implementation of exactLTRE where all possible interactions are calculated, we use an operator matrix presented in Poelwijk, Krishna, and Ranganathan (2016) <doi:10.1371/journal.pcbi.1004771>.

Authors:Christina Hernandez [aut, cre, cph]

exactLTRE_0.1.2.9000.tar.gz
exactLTRE_0.1.2.9000.zip(r-4.7-any)exactLTRE_0.1.2.9000.zip(r-4.6-any)exactLTRE_0.1.2.9000.zip(r-4.5-any)
exactLTRE_0.1.2.9000.tgz(r-4.6-any)exactLTRE_0.1.2.9000.tgz(r-4.5-any)
exactLTRE_0.1.2.9000.tar.gz(r-4.7-any)exactLTRE_0.1.2.9000.tar.gz(r-4.6-any)
exactLTRE_0.1.2.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
exactLTRE/json (API)

# Install 'exactLTRE' in R:
install.packages('exactLTRE', repos = c('https://chrissy3815.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/chrissy3815/exactltre/issues

On CRAN:

Conda:

2.74 score 1 stars 11 scripts 285 downloads 22 exports 13 dependencies

Last updated from:51490816f2. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK144
source / vignettesOK212
linux-release-x86_64OK112
macos-release-arm64OK79
macos-oldrel-arm64OK78
windows-develOK81
windows-releaseOK77
windows-oldrelOK65
wasm-releaseOK100

Exports:calc_matrix_effectscalc_matrix_responsesclassicalLTREclassicalLTRE_fixedclassicalLTRE_randomcollapse_mat_listcov_matrixexactLTREexactLTRE_fixedexactLTRE_randomfundamental_matrixgeneration_timelamDifflamDiff_symmetriclamVarlifespanmake.Gmatrixmean_matrixr_noughtreMatrun_matrix_checksvariance_complete

Dependencies:codaexpmlatticeMASSMatrixmatrixcalcMatrixModelsmcmcMCMCpackpopdemoquantregSparseMsurvival